There is an issue with merge replication whereby the MSmerge_contents and MSmerge_history do not tally. If this occurs then the only solution (so far) is to drop and recreate the database and replication.
The work-around to prevent this happening is :
update sysmergepublications set [generation_leveling_threshold] = 0
This stops generations being created in the first place, so the issue is avoided.
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